At this point, the program is already inside the R_program_i folder and there is no need to point it to a specific R_program folder in the srun command. In addition, the file path that is automatically generated is wrong- it uses the actual site ID instead of the wrapper folder number.
This issue will remove the reference to the R_program_i folder entirely.
kpalmqui
commented
4 years ago
Commit https://github.com/DrylandEcology/rSFSTEP2/commit/90f26e97f2b788c2630ebaa03c93af6a8c7a96cc updated sample.sh incorrectly, which is used exclusively on a super computer. See attached screenshot for changes to sample.sh.
At this point, the program is already inside the R_program_i folder and there is no need to point it to a specific R_program folder in the srun command. In addition, the file path that is automatically generated is wrong- it uses the actual site ID instead of the wrapper folder number.
This issue will remove the reference to the R_program_i folder entirely.