This is a bug where the current grepl statements in Main.R fail when executing a fixed input treatment (soils, species, rgroup) for multiple sites (i.e. 1, 11). The problem only occurs when one site ID in contained within another (i.e. 1 is contained within 11). As a result, site 1 is run for all sites that contain a 1 in their ID (i.e. 1, 11, 111), rather than the site-specific conditions meant for site 1. Therefore, extra output is generated that is not needed.
kpalmqui
commented
3 years ago
This is a bug where the current grepl statements in Main.R fail when executing a fixed input treatment (soils, species, rgroup) for multiple sites (i.e. 1, 11). The problem only occurs when one site ID in contained within another (i.e. 1 is contained within 11). As a result, site 1 is run for all sites that contain a 1 in their ID (i.e. 1, 11, 111), rather than the site-specific conditions meant for site 1. Therefore, extra output is generated that is not needed.
Solution, ensure an exact site ID match is found:
site2=paste("\<",site,"\>",sep='') if(grepl(site2,j))
This has been updated for all input files (species, soils, rgroup) where one can specify fixed inputs for a string of sites.