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Duke-GCB / bespin-api

Web application for running workflows in the cloud
MIT License
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Bespin shared an output project 27 times #177

Closed dleehr closed 5 years ago

dleehr commented 5 years ago

Logs from bespin-api bespin-api repeated share logs.txt attached. Some notes:

During the job, I set the cleanup_vm field to False, as I wanted to use this VM for testing REANA uploads.

Bespin-mailer only sent one set of notification messages, but I got 27 copies of 

Subject: Data ready for 'Bespin WES GATK4 Preprocessing v6 GATK4 preprocessing with haplotypecaller v5 2018-11-21'

Hello Dan Leehr,

Results are ready for your review.

Duke Data Service Project: Bespin WES GATK4 Preprocessing v6 GATK4 preprocessing with haplotypecaller v5 2018-11-21
URL: https://dataservice.duke.edu/#/project/9058e2a9-2b87-45b2-a5f0-b58a744b7fb6

Bespin job results.

Regards,

Bespin
Duke Center for Genomic and Computational Biology

The service that sent the emails was D4S2, but it looks like the root cause was in bespin-api or lando.

johnbradley commented 5 years ago

I think this was due to VM lando worker processing the store_job_output message multiple times. If you look at https://datadelivery.genome.duke.edu/admin/d4s2_api/share/66/history/ you can see the share was sent multiple times. Perhaps lando server is posting this message multiple times.