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Duke-GCB / calrissian

CWL on Kubernetes
https://duke-gcb.github.io/calrissian/
MIT License
42 stars 16 forks source link

Aging dependencies and Python 3.7 #160

Closed fabricebrito closed 10 months ago

fabricebrito commented 10 months ago

Calrissian relies on Python 3.7 and old pinned dependencies.

fabricebrito commented 10 months ago

@mr-c do you have any hints on why this test https://github.com/Duke-GCB/calrissian/blob/issue-160/tests/test_job.py#L46 is failing with an update of the dependency shellescape==3.8.1 (instead of shellescape==3.4.1? It uses needs_shell_quoting_re = re.compile(r"""(^$|[\s|&;()<>\'"$@])""") from cwltool's job.py

mr-c commented 10 months ago

@mr-c do you have any hints on why this test https://github.com/Duke-GCB/calrissian/blob/issue-160/tests/test_job.py#L46 is failing with an update of the dependency shellescape==3.8.1 (instead of shellescape==3.4.1? It uses needs_shell_quoting_re = re.compile(r"""(^$|[\s|&;()<>\'"$@])""") from cwltool's job.py

I don't, no.

That's the versions we've been testing with: https://github.com/common-workflow-language/cwltool/actions/runs/6932721232/job/18861573891?pr=1938#step:7:168