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DuncanBrady
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ST_Honours_2024
Record of work Completed as part of Robert Bradys 2024 Honors project at Vafaee Lab(UNSW). Project is focused on the downstream analysis of Spatial Transcriptomics Data.
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Link prediction tutorial
#33
DuncanBrady
closed
5 months ago
0
Evaluate Edge Based Attention Model
#32
DuncanBrady
opened
5 months ago
0
Evaluate Attention Based Model
#31
DuncanBrady
opened
5 months ago
0
Train Edge Based Attention Model
#30
DuncanBrady
opened
5 months ago
0
Train Attention Based Model
#29
DuncanBrady
opened
5 months ago
0
Evaluate Simple GCN
#28
DuncanBrady
opened
5 months ago
0
Train Simple GCN Model
#27
DuncanBrady
opened
5 months ago
0
Implement Edge Based Attention Architecture
#26
DuncanBrady
opened
5 months ago
0
Implement Attention Based Architecture
#25
DuncanBrady
opened
5 months ago
0
Create ground truth data using ligand-receptor pairs to label positive edges
#24
DuncanBrady
opened
5 months ago
0
Implement edge feature matrix
#23
DuncanBrady
opened
5 months ago
0
Implement cell type analysis
#22
DuncanBrady
opened
5 months ago
0
Create training and testing pipeline
#21
DuncanBrady
opened
5 months ago
0
Implement Cross Validation Training Strategy
#20
DuncanBrady
opened
5 months ago
0
Normalise Distance between cells and determine distance threshold
#19
DuncanBrady
opened
5 months ago
0
Normalise Gene Expression within cells
#18
DuncanBrady
opened
5 months ago
0
Create preprocessing pipeline for both Merfish and Seqfish data
#17
DuncanBrady
opened
5 months ago
0
Update README , to include more details regarding project and plans
#16
DuncanBrady
opened
5 months ago
0
Graph inputs
#15
DuncanBrady
closed
5 months ago
0
Implement simple GCN
#14
DuncanBrady
opened
5 months ago
0
establish what data processing is required
#13
DuncanBrady
closed
5 months ago
1
select datasets that will used
#12
DuncanBrady
closed
5 months ago
0
Decide on graph framework that will be used to create GNN
#11
DuncanBrady
closed
5 months ago
1
Successfully install GCNG
#10
DuncanBrady
closed
5 months ago
1
Barcode analysis
#9
DuncanBrady
closed
6 months ago
0
Review inputs for existing analysis methods
#8
DuncanBrady
closed
5 months ago
0
Examine Squidpy gr.interaction_matrix
#7
DuncanBrady
closed
5 months ago
0
Visualise Squidpy gr.spatial_neighbours and explore how the graphs structured
#6
DuncanBrady
closed
5 months ago
0
Barcode analysis
#5
DuncanBrady
closed
6 months ago
0
Create Presentation regarding progress and literature review
#4
DuncanBrady
closed
6 months ago
1
Perform Basic Analysis using Squidpy
#3
DuncanBrady
closed
6 months ago
1
Create a basic pipeline for reconstructed sequencing data
#2
DuncanBrady
closed
6 months ago
1
Create Basic Analysis of Barcoded ST data
#1
DuncanBrady
closed
6 months ago
1