I have noticed that the input for FINSURF is not a true VCF file as it does not contain a full header. Furthermore, the column list is greatly truncated from a standard VCF file. Can you include an update to allow it to correctly parse native VCF files? In the mean time this requires all users to recognize this and edit their vcf files appropriately to match the restrictive input format requirement in the current script. You should also update the readme to notify users about specifics of the input requirements until the code is patched. Thank you.
Hi FINSURF team,
I have noticed that the input for FINSURF is not a true VCF file as it does not contain a full header. Furthermore, the column list is greatly truncated from a standard VCF file. Can you include an update to allow it to correctly parse native VCF files? In the mean time this requires all users to recognize this and edit their vcf files appropriately to match the restrictive input format requirement in the current script. You should also update the readme to notify users about specifics of the input requirements until the code is patched. Thank you.