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DyogenIBENS / SCORPIOS

SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
GNU General Public License v3.0
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error report question #12

Closed sadiexiaoyu closed 1 month ago

sadiexiaoyu commented 1 month ago

Hi, Thanks for the cool software. I have installed scorpios following the instructions. However, when I use it, I got the following error report: (scorpios) $ snakemake --configfile config_example.yaml --use-conda --cores 4 --scheduler=greedy --conda-frontend conda

SyntaxError in line 9 of /.conda/envs/scorpios/lib/python3.6/site-packages/smart_open/s3.py: future feature annotations is not defined (s3.py, line 9) File "/.conda/envs/scorpios/lib/python3.6/site-packages/smart_open/init.py", line 34, in File "/.conda/envs/scorpios/lib/python3.6/site-packages/smart_open/smart_open_lib.py", line 35, in File "/.conda/envs/scorpios/lib/python3.6/site-packages/smart_open/doctools.py", line 21, in File "/.conda/envs/scorpios/lib/python3.6/site-packages/smart_open/transport.py", line 104, in File "/.conda/envs/scorpios/lib/python3.6/site-packages/smart_open/transport.py", line 49, in register_transport File "/.conda/envs/scorpios/lib/python3.6/importlib/init.py", line 126, in import_module

Could you please give any suggestion? Thanks!

sadiexiaoyu commented 1 month ago

The issue is resolved. It was a problem with the Python version.

eparey commented 1 month ago

Fixed with the updated environment file (envs/scorpios.yaml)