wspear
commented
2 years ago This covers the run of the e4s testsuite's gasnet, kokkos, superlu and superlu-dist tests on perlmutter, targeting e4s 21.11.
Gasnet test code failed to compile like:
cc `pkg-config --cflags gasnet-smp-par` -I. -c testbarrier.c
Package gasnet-smp-par was not found in the pkg-config search path.
Perhaps you should add the directory containing `gasnet-smp-par.pc'
to the PKG_CONFIG_PATH environment variable
No package 'gasnet-smp-par' found
testbarrier.c:7:10: fatal error: gasnetex.h: No such file or directory
7 | #include <gasnetex.h>
| ^~~~~~~~~~~~
compilation terminated.
make: *** [Makefile:24: testbarrier.o] Error 1
cc `pkg-config --cflags gasnet-smp-par` -I. -c testbarrier.c
Package gasnet-smp-par was not found in the pkg-config search path.
Perhaps you should add the directory containing `gasnet-smp-par.pc'
to the PKG_CONFIG_PATH environment variable
No package 'gasnet-smp-par' found
testbarrier.c:7:10: fatal error: gasnetex.h: No such file or directory
7 | #include <gasnetex.h>
| ^~~~~~~~~~~~
compilation terminated.
Kokkos test code cmake failed like:
-- Configuring done
CMake Error at CMakeLists.txt:31 (target_link_libraries):
Error evaluating generator expression:
$<LINK_LANGUAGE:CXX>
Expression did not evaluate to a known generator expression
CMake Error at CMakeLists.txt:35 (target_link_libraries):
Error evaluating generator expression:
$<LINK_LANGUAGE:CXX>
Expression did not evaluate to a known generator expression
-- Generating done
CMake Generate step failed. Build files cannot be regenerated correctly.Superlu dist spack test failed like:
9 /usr/bin/ld: warning: libgfortran.so.5, needed by /opt/cray/pe/libsc
i/21.08.1.2/GNU/9.1/x86_64/lib/libsci_gnu.so, not found (try using -
rpath or -rpath-link)
10 /usr/bin/ld: warning: libfabric.so.1, needed by /opt/cray/pe/mpich/8
.1.13/ofi/gnu/9.1/lib/libmpi_gnu_91.so, not found (try using -rpath
or -rpath-link)
>> 11 /usr/bin/ld: /opt/cray/pe/libsci/21.08.1.2/GNU/9.1/x86_64/lib/libsci
_gnu.so: undefined reference to `_gfortran_concat_string@@GFORTRAN_8'With numerous additional undefined symbols.
Todo: Investigate and correct any relevant problems with test construction. Determine if any package-side issues are still present as of the 22.05 e4s release and escalate as needed.
shahzebsiddiqui
Name of Software
testsuite
URL for Software
https://github.com/E4S-Project/testsuite
Contact Details
shahzebsiddiqui@lbl.gov
HPC System
Perlmutter
Request Description
We have this test https://software.nersc.gov/NERSC/buildtest-nersc/-/blob/devel/buildspecs/e4s/E4S-Testsuite/e4s_21.11_perlmutter.yml that we run against the Perlmutter E4S stack using buildtest. This runs several tests for different products and we noticed several errors that can be seen in CDASH https://my.cdash.org/test/56389573.
Relevant log output
Reproduce Bug
If you want to rerun the pipeline just go to https://software.nersc.gov/NERSC/buildtest-nersc/-/pipeline_schedules and press "Play" under Scheduled Pipeline