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EA2106-Universite-Francois-Rabelais / Expression-network-analysis

C and R codes to decipher transcriptional associations
http://bbv-ea2106.sciences.univ-tours.fr/
GNU General Public License v3.0
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There is something wrong when I make the "hrr" #3

Closed zyx336 closed 3 years ago

zyx336 commented 3 years ago

to install the software, I typed 'make' in hrr directory, but it can't find the liblapack.a, mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c array_d.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c array_f.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c array_i.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c array_list_d.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c array_list_f.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c bench_file.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c compute.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c compute_weighted_pcc.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c compute_weighted_pcc_d.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c display.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c dump.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c main.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c mem.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c mem_pool.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ -c svd.c mpicc -Wall -DMAINMAIN -O2 -Ic:/Users/rod/Work/Applis/lapack-3.5.0/lapacke/include/ array_d.o array_f.o array_i.o array_list_d.o array_list_f.o bench_file.o compute.o compute_weighted_pcc.o compute_weighted_pcc_d.o display.o dump.o main.o mem.o mem_pool.o svd.o c:/Users/rod/Work/Applis/lapack-3.5.0/liblapacke.a c:/Users/rod/Work/Applis/lapack-3.5.0/liblapack.a c:/Users/rod/Work/Applis/lapack-3.5.0/libtmglib.a -o hrr -lm -lblas -lgfortran gcc: error: c:/Users/rod/Work/Applis/lapack-3.5.0/liblapacke.a: No such file or directory gcc: error: c:/Users/rod/Work/Applis/lapack-3.5.0/liblapack.a: No such file or directory gcc: error: c:/Users/rod/Work/Applis/lapack-3.5.0/libtmglib.a: No such file or directory make: *** [Makefile:26: hrr] Error 1 I am sure that I have install blas cblas and lapack. Do you have some ideas with this error?

EA2106-Universite-Francois-Rabelais commented 3 years ago

Hi @zyx336 , We apologize for this: the default paths are that from our local lib. Please provide the correct paths to the different lib*.a in the Makefile before typing 'make' in the console. Good luck!

zyx336 commented 3 years ago

I solved this problem with your method. The program is running normally. Thank you! @EA2106-Universite-Francois-Rabelais

EA2106-Universite-Francois-Rabelais commented 3 years ago

Glad to hear!