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EBI-Metagenomics / EukCC

Tool to estimate genome quality of microbial eukaryotes
GNU General Public License v3.0
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Install issue #1

Closed claudiodonati closed 4 years ago

claudiodonati commented 4 years ago

I am trying to install EukCC, and I am running in the following issue:

(eukcc) root@cebe688dfe44:/Junk/EukCC# pip3 install . Processing /Junk/EukCC Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... done Requirement already satisfied: ete3 in /usr/local/lib/python3.7/dist-packages (from eukcc==0.1) (3.1.1) Requirement already satisfied: pyyaml in /usr/local/lib/python3.7/dist-packages (from eukcc==0.1) (5.3) ERROR: Could not find a version that satisfies the requirement gzip (from eukcc==0.1) (from versions: none) ERROR: No matching distribution found for gzip (from eukcc==0.1)

However, gzip is installed.

(eukcc) root@cebe688dfe44:/Junk/EukCC# gzip --version gzip 1.9 Copyright (C) 2017 Free Software Foundation, Inc. Copyright (C) 1993 Jean-loup Gailly. This is free software. You may redistribute copies of it under the terms of the GNU General Public License https://www.gnu.org/licenses/gpl.html. There is NO WARRANTY, to the extent permitted by law.

Written by Jean-loup Gailly.

Any hint?

openpaul commented 4 years ago

Thank you for testing EukCC. This was fixed now in 7151b59, I hope the install works now for you with the newest version.

I think gzip is not a pip dependency and thus not installable. Ended up wrongly there I assume. Now the install works for me here. Hope it works for you too.