Closed sarah872 closed 3 years ago
Hello, could you provide me with the eukcc_wgs-holobiont/workfiles/pplacer/placementReduced.jplace
file (If possible all files in the pplacer folder would be perfect) ? It might be that no placement has enough support and is thus discarded. I might need to adjust the parameters and/or make the error message more meaningful.
So your placements had a posterior probability less than 0.4 (default), thus EukCC assumed they are not good enough to consider this placement valid.
You can however change this threshold using the --minPlacementLikelyhood
parameter. You could set it to 0 to deactivate this filtering. I would think thats also a valid parameter setting, although less conservative.
Let me know if adjusting the parameter works for you. Might be worth writing about it in the documentation then.
Yes, thank you, setting it to 0 worked!
Hi, I was running
eukcc
on an illumina assembly of a big eukaryotic genome and got the following error:The
eukcc_wgs-holobiont/workfiles/pplacer/placementReduced.jplace
exists and is not empty. I tried re-running but got the same error.