Closed Otavio20 closed 3 years ago
Thanks for reporting this. Seeing all the warnings about 'taxid not found' I would suggest you should update the ete3 NCBI taxonomy database.
http://etetoolkit.org/docs/latest/tutorial/tutorial_ncbitaxonomy.html#upgrading-the-local-database
This should fix the issue, but I also am working on a fix for this but will first need to run some tests before creating a new version (see commit: 425f3cb1ff184364cc3f19e7208bd8ba31a5cf2d). If you are familiar with python feel free to compile the package from the dev branch and test it.
The error occurs because ete3 cant compute lineages for any node, leaving EukCC without any information to infer the LCA for your MAG.
It worked!
Thank you very much!
Dear all,
I'm facing issues with the script workflow.py as pointed bellow:![error](https://user-images.githubusercontent.com/46409628/95665850-75557980-0b2a-11eb-987a-078b0df33369.png)
It is occurring even when the GeneMark-ES predict proteins. Thanks in advance.