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EBI-Metagenomics / EukCC

Tool to estimate genome quality of microbial eukaryotes
GNU General Public License v3.0
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eukccdb #2

Closed housw closed 4 years ago

housw commented 4 years ago

Hi,

how can I get an up to date eukccdb? The EBI one seems doesn't work on our server:

01/24/2020 16:51:38:  Starting EukCC
01/24/2020 16:51:38:  This is an old database, it does not profide machine readable information about the database
01/24/2020 16:51:38:  Running GeneMark-ES
01/24/2020 16:51:49:  GeneMark-ES failed on this bin

Thanks, Shengwei

openpaul commented 4 years ago

Hi, yes we just noticed this as well. The database will be updated shortly, but EukCC should still work with this old version of the DB. GeneMark-ES seems to have failed independently in your case, so proteins could not be predicted. I will close this issue as soon as we pushed the new database online.

openpaul commented 4 years ago

This should be fixed with db version 1.1:

http://ftp.ebi.ac.uk/pub/databases/metagenomics/eukcc/eukcc_db_v1.1.tar.gz