EBI-Metagenomics / EukCC

Tool to estimate genome quality of microbial eukaryotes
GNU General Public License v3.0
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Example workflow? #28

Open jolespin opened 2 years ago

jolespin commented 2 years ago

I'm wondering if you have any example workflows where it shows the output files and directory structure.

Working on adding EukCC to a pipeline. I noticed that v2 uses MetaEuk which I was going to run separately but ai guess I don't need to now.

Is there a way to provide a custom metaeuk db? Or mmseqs2 I guess.

Can I access the genes created in the backend by EukCC?