Closed openpaul closed 4 years ago
This should be fixed now
I've installed it today following you guide on readthedocs and it failed by:
pplacer is not installed
09/23/2020 12:36:53: Placing proteins in tree
Pplacer failed with unkown reason
Even your suggested conda install command above does not help. What can I do? I'm using Ubuntu 18.04 LTS.
It seems pplacer was not installed or loaded by conda. Pplacer needs to be availiable in your path.
Can you do a
which pplacer
And
which hmmsearch
Both should give something like /home/paul/.miniconda3/bin/pplacer
.
If they result in pplacer not found
, you dont have them installed correctly.
Hey Paul, thank you very much. Indeed, it was a problem by conda :-) I've solved that. Conda did not load correctful the environment. Thank you for your response.
With the current version 0.2 in bioconda pplacer and hmmer are not getting installed. This will be fixed soon, but in case you get this error please make sure to install hmmer and pplacer manually in the conda environment:
Hope to have this fixed soon.