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EBI-Metagenomics / MGnifyR

R package for searching, downloading and analysis of EBI MGnify metagenomics data
https://ebi-metagenomics.github.io/MGnifyR/
Artistic License 2.0
19 stars 10 forks source link

Error during installation #36

Closed vgopikaa closed 2 weeks ago

vgopikaa commented 4 months ago

Hi, I am trying to install MGnifyR in my R desktop (version 4.3.3, bioconductor is up to date). I tried using BiocManager but failed to install the package. While installing from github using remotes(), I stumbled upon the following error. My understanding is that 4.3.3 is the latest and there isnt yet a ver 4.4.0 ? Could you please help me out with this?

Thanks so much in advance Gopikaa

Screenshot 2024-03-07 093844

s-meaden commented 3 months ago

I'm getting the same issue when installing from github but have installed MGnifyR on various machines in the past without this problem. Also getting the following error with the bioconductor install:

Warning message:
package ‘MGnifyR’ is not available for Bioconductor version '3.18'

Any help much appreciated!

TuomasBorman commented 3 weeks ago

Hello!

Sorry for very late response. I did not receive notification about this issue.

Related to Bioconductor submission, we had to use latest development version of R (which was 4.4.0). Now 4.4.0 is the release version of R, and MGnifyR package can be found from release version of Bioconductor so everything should be ok. If not, I'm happy to help. Now I get notifications on these issues so I will reply quickly.

-Tuomas

TuomasBorman commented 2 weeks ago

Closing, I expect that the issue has resolved.