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EBI-Metagenomics / MGnifyR

R package for searching, downloading and analysis of EBI MGnify metagenomics data
https://ebi-metagenomics.github.io/MGnifyR/
Artistic License 2.0
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Diversity indices #5

Closed mweberr closed 2 months ago

mweberr commented 2 years ago

Hi,

to do further analyses, such as the calculation of diversity indices, detailed analysis of the taxonomy and visualisation of multiple samples, which analysis tools to you recommend ? Are there tutorials which work on the results of MGnifyR ?

Best, Michael

TuomasBorman commented 2 months ago

Hello, sorry for very late reply. There has been lots of changes and this repository has been moved under EBI. The package is now in Bioconductor, and supporting the cutting-edge tools. We recommend using miaverse.

See the vignette and Orchestrating Microbiome Analysis online book for more info.