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EBI-Metagenomics / ebi-metagenomics-cwl

This repository contains the CWL description of the EBI Metagenomics pipeline
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Possible bug in infernal descriptions #23

Closed rdfinn closed 7 years ago

rdfinn commented 7 years ago

In the infernal description, it refers to "spades" in the specs - should this not be cmscan?

hints:
  - $import: infernal-docker.yml
  - class: SoftwareRequirement
    packages:
      spades:
        specs: [ "https://identifiers.org/rrid/RRID:SCR_011809" ]
        version: [ "1.1.2" ]

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl/blob/master/tools/infernal-cmscan.cwl

mr-c commented 7 years ago

Fixed in 7be1be85bd4f8dc72a9f1572a6637bb1f2536bed, thanks!