Add binning to assembly pipeline - Githubissues

EBI-Metagenomics / ebi-metagenomics-cwl

This repository contains the CWL description of the EBI Metagenomics pipeline

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Add binning to assembly pipeline #70

Open rdfinn opened 7 years ago

rdfinn commented 7 years ago

Add simple binning to the assembly pipeline:

[ ] Install bbmap tool
[ ] Install MetaBat
[ ] See if we can get QC files from metaspades
[ ] map sequences to assembly, CWL implementation
[ ] metabat CWL implementation
[ ] Investigate MaxBins and MetaWatt
[ ] Should we use CheckM or something similar to assess quality?