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EBI-Metagenomics / genome_uploader

Python script to upload bins and MAGs to ENA (European Nucleotide Archive)
Apache License 2.0
20 stars 3 forks source link

genome_upload.py is not available #17

Open ay-amityadav opened 1 month ago

ay-amityadav commented 1 month ago

Hi,

I installed genome_uploader using the below two commands:

conda env create -f requirements.yml
conda activate genome_uploader

When trying to run python genome_upload.py ... , it says no such file is present. I checked the genome_uploader path directory, and indeed genome_upload.py is not there.

Can you please see this?

Many thanks Amit

Ge94 commented 1 month ago

Hi Amit, thank you for reporting this! We haven't updated the documentation yet - the project has been restructured and the main script is in another location now. More specifically, you will need to run python genomeuploader/genome_upload.py .... As an alternative you could add the full path to genome_upload.py to your $PATH environment variable.

Thank you Germana