Closed mberacochea closed 1 year ago
Huge amazing work, Martin! Thank you :) The only thing I care about is containers for some tools (I added comments with examples). Some modules use only tools that we can replace with biocontainers of needed version. And add python/perl/biopython containers for custom scripts.
The review process was done outside github.
Migration from the bash script approach to nextflow.
I've migrated the scripts too, ran black to format them and did some minor refactoring to improve / adjust features.
I need to adjust some of the unit tests and link Jenkins as the CI/CD