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EBI-Metagenomics / genomes-catalogue-pipeline

MGnify genome analysis pipeline
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Bugfix/ena metadata #51

Closed tgurbich closed 1 year ago

tgurbich commented 1 year ago

Added changes to improve location metadata handling for isolates. Added an alternative lookup from API if the XML data retrieval fails and accounted for different possible attribute names of geolocation field in JSON.

tgurbich commented 1 year ago

Thank you, @mberacochea. Added logging.