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EBI-Metagenomics / genomes-catalogue-pipeline

MGnify genome analysis pipeline
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Missing EBI profile #81

Closed amardeepranu closed 7 months ago

amardeepranu commented 8 months ago

https://github.com/EBI-Metagenomics/genomes-pipeline/blob/853487f6dda1420fd8b6b41dd4aff5c8540c7e37/nextflow.config#L27

I can't seem to find the ebi profile in nextflow.config that's referenced in the README and above

KateSakharova commented 7 months ago

Hi @amardeepranu, ebi profile is a general term. You can check codon_lsf or codon_slurm profiles. Databases are described here.