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EBI-Metagenomics
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mobilome-annotation-pipeline
Apache License 2.0
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Some fixes for CRISPRCasFinder
#39
mberacochea
opened
1 week ago
0
[Testing] Fix singularity def image for IceFinder
#38
mberacochea
closed
1 week ago
0
Build of ICEFinder container failed
#37
boykebunk
opened
1 month ago
17
Python3 incompatibility
#36
boykebunk
closed
2 weeks ago
5
Process `GENOMAD (1)` terminated with an error exit status (2)
#35
Andrewab9
opened
2 months ago
3
Update main in prep for new release
#34
mberacochea
closed
2 months ago
1
This should fix an intermittent problem with ICEFinder
#33
mberacochea
closed
3 months ago
0
nf-test update snaps
#32
Ales-ibt
closed
4 months ago
0
Virify debug, user_mobilome_clean output added, and amrfinderplus report improved
#31
Ales-ibt
closed
4 months ago
1
Fix/user mobilome clean
#30
Ales-ibt
closed
4 months ago
0
Fix/amrfinder report contigs
#29
Ales-ibt
closed
4 months ago
0
Debug/virify qc
#28
Ales-ibt
closed
4 months ago
0
PR to make the new release
#27
mberacochea
closed
4 months ago
0
Re-work icefinder
#26
mberacochea
closed
4 months ago
0
Refactor IceFinder
#25
mberacochea
closed
4 months ago
1
Dev
#24
Ales-ibt
closed
5 months ago
0
Readme and config files updated
#23
Ales-ibt
closed
5 months ago
0
Error to run the script to format the db for diamond
#22
llk578496
closed
2 months ago
7
Can the annotation software add bakta?
#21
Dx-wmc
opened
6 months ago
4
Use pipeline without root privelages
#20
timghaly
closed
8 months ago
2
Merge pull request #18 from EBI-Metagenomics/main
#19
Ales-ibt
closed
9 months ago
1
A couple of changes missing on dev branch
#18
Ales-ibt
closed
9 months ago
0
Update main.nf
#17
Ales-ibt
closed
9 months ago
0
Improve/arg annot
#16
Ales-ibt
closed
10 months ago
0
Script to cross mobilome and resistome uploaded
#15
Ales-ibt
closed
1 year ago
0
Adding script to write plasmids fasta file
#14
Ales-ibt
closed
1 year ago
0
Fixes and debugging the cross_momo_viri.py script
#13
Ales-ibt
closed
1 year ago
0
Add virify fasta output and fix missing prophages starting on 0
#12
Ales-ibt
closed
1 year ago
0
Minor debug on cross_momo_viri.py
#11
Ales-ibt
closed
1 year ago
0
More fixes
#10
Ales-ibt
closed
1 year ago
0
Fixed bugs
#9
Ales-ibt
closed
1 year ago
0
Improved documentation
#8
Ales-ibt
closed
1 year ago
0
Small refinements
#7
Ales-ibt
closed
1 year ago
0
Fix visuals size
#6
Ales-ibt
closed
1 year ago
0
MoMofy to public
#5
Ales-ibt
closed
1 year ago
0
Migfinder tool
#4
Ales-ibt
closed
1 year ago
1
Docker file for annotation of integron passenger genes
#3
Ales-ibt
closed
1 year ago
1
Dockerfile for mig_finder tool
#2
Ales-ibt
closed
2 years ago
0
ICEFinder container
#1
Ales-ibt
closed
1 year ago
1