File missing & Output parameter missing

EBI-Metagenomics / pipeline-v5

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

https://www.ebi.ac.uk/metagenomics/

Apache License 2.0

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File missing & Output parameter missing #12

Closed Rradley closed 4 years ago

Rradley commented 4 years ago

raw_read_single_Error.txt Assembly_Error.txt

These two shortened errors (full error messages available at request) occur when i run raw_reads single and assembly pipelines.

Any light on the issues would be a great help

KateSakharova commented 4 years ago

@Rradley I think I know what is wrong with assembly. Could you check path in assembly.yml in rfam_models of alphatmRNA.cm? Is it /home/radleyrp/Documents/DELETE/ebi_pipeline/pipeline-v5/other/alphatmRNA.cm ?

Regarding another issue - it would be solved in a new release ~ in a week

Rradley commented 4 years ago

/home/radleyrp/Documents/DELETE/ebi_pipeline/pipeline-v5/other/alpha_tmRNA.cm : it is indeed. I noticed this folder and file do not exist.

That's amazing, thankyou!