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EBI-Metagenomics / pipeline-v5

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
https://www.ebi.ac.uk/metagenomics/
Apache License 2.0
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Refseq db #35

Closed Mohamedema closed 2 years ago

Mohamedema commented 3 years ago

Please can I know the version of used SILVA database (eg SILVA_138.1_SSURef_NR99.fasta.gz) also please, what is the source of uniref90_diamond-v0.9.21.dmnd.gz is this database generate from NCBI nr for diamond?

KateSakharova commented 3 years ago

@Mohamedema hello, you can check all versions here https://emg-docs.readthedocs.io/en/latest/analysis.html#overview If you have more questions we are happy to answer.

Kate