search

EBI-predocs / research-software

:computer: Instructions, tips and issue tracker for the software on the EBI computing cluster
6 stars 2 forks source link

GCC update breaks numpy #47

Closed mxenoph closed 8 years ago

mxenoph commented 8 years ago

Traceback (most recent call last): File "/homes/mxenoph/source/count-tags.py", line 15, in import metaseq File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/metaseq/init.py", line 4, in import helpers File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/metaseq/helpers.py", line 6, in import matplotlib File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/matplotlib/init.py", line 122, in from matplotlib.cbook import is_string_like, mplDeprecation, dedent, get_label File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/matplotlib/cbook.py", line 33, in import numpy as np File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/numpy/init.py", line 180, in from . import add_newdocs File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in from numpy.lib import add_newdoc File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/numpy/lib/init.py", line 8, in from .type_check import * File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in import numpy.core.numeric as _nx File "/nfs/research2/software/prefix/usr/lib/python2.7/site-packages/numpy/core/init.py", line 14, in from . import multiarray ImportError: libquadmath.so.0: cannot open shared object file: No such file or directory

mschubert commented 8 years ago

also on simple import numpy

mschubert commented 8 years ago

issue is that lapack-reference needs to be recompiled but ebuild is broken

workaround is USE=-lapack emerge -1 --nodeps numpy (still no import for scikits_learn)

mschubert commented 8 years ago

symptom of #48