EBISPOT / CMPO

Cellular Microscopy Phenotype Ontology
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new CMPO phenotypes - enrichment and de-enrichment of mainly cell morphology phenotypes #3

Closed siiraa closed 6 years ago

siiraa commented 6 years ago

Phenotypes from this paper http://dx.doi.org/10.1101/092403

All about enrichment and de-enrichment of sub populations of cells which we have also seen in other HCS papers but perhaps not adequately described. Phenotypes identified are:

enriched for extremely elongated enriched for slightly elongated enriched for extremely triangular enriched for huge enriched for slightly large enriched for small asymmetric cells enriched for multi-nucleate enriched for telophase/late telophase enriched for disjoint bright mito enriched for apoptotic de-enriched for slightly elongated de-enriched for extremely elongated de-enriched for extremely triangular de-enriched for huge de-enriched for slightly large de-enriched for small asymmetric cells de-enriched for multi-nucleate de-enriched for telophase/late telophase de-enriched for disjoint bright mito slightly low cell density low cell density normal cell density

eleanorwilliams commented 6 years ago

We decided to just use the single cell phenotypes for the enriched terms for now and so this issue can be closed. We may revisit the population vs. single cell phenotypes in future or handle them within the Image Data Resource itself instead. @siiraa @simonjupp