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EBISPOT / OLS

Ontology Lookup Service from SPOT at EBI
http://www.ebi.ac.uk/ols
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Categories OLS entries (ontologies) using EDAM Topics #43

Open joncison opened 8 years ago

joncison commented 8 years ago

Dear OLSians

I think it would be really nice to tag OLS entries with EDAM Topics (http://edamontology.org/topic_0003). We're making big efforts to make this branch simpler and more usable, and OLS would be a perfect application. For our part, we'll gladly tweak the Topics branch to suit your needs - and also help with the tagging. Then OLS can join a growing number of resources which are using EDAM Topics in this way.

What do you think?

simonjupp commented 8 years ago

Sorry for delay in getting back to you, but in short, yes we want this. I'll drop you an e-mail to set up a call to discuss this.

simonjupp commented 8 years ago

Jon, Here's the list of themes from the OBO ontologies. Next step is to see how many of these are topics in EDAM. I'll try and do a first pass.

MS experiments adverse events, health algorithms anatomy anatomy and development behavior biochemistry biological process biological sequence biology cells clinical development disease environment experiments health information lipids medicine molecular structure phenotype proteins provenance relations resources statistics taxonomy upper

joncison commented 8 years ago

Excellent, pls. upload a first mapping to Topics here and I will revise. I can say now there's a matching concept for most of it, but we may need a few new snyonyms.

simonjupp commented 8 years ago

First pass

https://docs.google.com/spreadsheets/d/1XPo31DvhXvCdn93xNKzjb-15T83uwQyC9QQeLlH6AwQ/edit?usp=sharing

simonjupp commented 8 years ago

FYI cc @cmungall @mcourtot

joncison commented 8 years ago

Great, thanks! My revision is done. If it's not obvious what I did, please get back ...

joncison commented 6 years ago

just giving this a nudge ... I went through the spreadsheet and added EDAM topics for new terms (ontologies) that have been added since the last time we looked. I also added some comments.

joncison commented 6 years ago

Hi @simonjupp @cmungall @mcourtot

I made a bunch of changes as listed in EDAM Mapping tab in EDAM 1.21 (out soon), will gladly make more once I get some feedback via that sheet. Cheers.