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EBISPOT / efo

Github repo for the Experimental Factor Ontology (EFO)
https://www.ebi.ac.uk/efo/
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Some EFO URIs are missing the "www" #1456

Closed eks-ebi closed 2 years ago

eks-ebi commented 2 years ago

Some EFO URIs are missing the "www" e.g. http://ebi.ac.uk/efo/EFO_0600073 vs a more typical term e.g. http://www.ebi.ac.uk/efo/EFO_0010904

This is causing some issues with correctly displaying the terms in the GWAS Catalog. Tagging @ala-ebi, who is also looking into the issue from the GWAS Catalog side.

zoependlington commented 2 years ago

List of 60+ terms that this is the case for:

'ABO blood group' <http://ebi.ac.uk/efo/EFO_0600059>
'Achilles tendon injury' <http://ebi.ac.uk/efo/EFO_0600078>
'PP interval' <http://ebi.ac.uk/efo/EFO_0600085>
'anti-WU polyomavirus antibody measurement' <http://ebi.ac.uk/efo/EFO_0600073>
'anti-human polyomavirus 6 antibody measurement' <http://ebi.ac.uk/efo/EFO_0600074>
'blood glutathione peroxidase measurement' <http://ebi.ac.uk/efo/EFO_0600071>
'blood group A' <http://ebi.ac.uk/efo/EFO_0600060>
'blood group AB' <http://ebi.ac.uk/efo/EFO_0600062>
'blood group B' <http://ebi.ac.uk/efo/EFO_0600061>
'blood group O' <http://ebi.ac.uk/efo/EFO_0600063>
'blood group' <http://ebi.ac.uk/efo/EFO_0600058>
'bowel opening frequency' <http://ebi.ac.uk/efo/EFO_0600084>
'cardiac troponin I change measurement' <http://ebi.ac.uk/efo/EFO_0600077>
'complement factor H-like 1 protein measurement' <http://ebi.ac.uk/efo/EFO_0600092>
'complement factor H-related protein 1 measurement' <http://ebi.ac.uk/efo/EFO_0600054>
'complement factor H-related protein 2 measurement' <http://ebi.ac.uk/efo/EFO_0600055>
'complement factor H-related protein 3 measurement' <http://ebi.ac.uk/efo/EFO_0600056>
'complement factor H-related protein 4 measurement' <http://ebi.ac.uk/efo/EFO_0600091>
'complement factor H-related protein 4A measurement' <http://ebi.ac.uk/efo/EFO_0600057>
'complement factor H-related proteins measurement' <http://ebi.ac.uk/efo/EFO_0600053>
'family history of prostate cancer' <http://ebi.ac.uk/efo/EFO_0600083>
'gene expression measurement' <http://ebi.ac.uk/efo/EFO_0600068>
'glucocorticoid receptor gene expression measurement' <http://ebi.ac.uk/efo/EFO_0600079>
'human polyomavirus 6 seropositivity' <http://ebi.ac.uk/efo/EFO_0600072>
'insulin use measurement' <http://ebi.ac.uk/efo/EFO_0600082>
'interleukin-6 gene expression measurement' <http://ebi.ac.uk/efo/EFO_0600070>
'kidney volume' <http://ebi.ac.uk/efo/EFO_0600044>
'left atrial volume measurement' <http://ebi.ac.uk/efo/EFO_0600035>
'liver volume' <http://ebi.ac.uk/efo/EFO_0600048>
'lung volume' <http://ebi.ac.uk/efo/EFO_0600046>
'lymphocyte:monocyte ratio' <http://ebi.ac.uk/efo/EFO_0600088>
'mastiha supplement exposure measurement' <http://ebi.ac.uk/efo/EFO_0600067>
'muscle fiber cross-sectional area measurement' <http://ebi.ac.uk/efo/EFO_0600036>
'narrow occludable anterior chamber angle' <http://ebi.ac.uk/efo/EFO_0600087>
'nutritional supplement exposure measurement' <http://ebi.ac.uk/efo/EFO_0600066>
'pancreas fat measurement' <http://ebi.ac.uk/efo/EFO_0600049>
'pancreas volume' <http://ebi.ac.uk/efo/EFO_0600045>
'peritoneal solute transfer rate' <http://ebi.ac.uk/efo/EFO_0600089>
'permanent dental caries' <http://ebi.ac.uk/efo/EFO_0600096>
'plasma N-desmethylclozapine measurement' <http://ebi.ac.uk/efo/EFO_0600039>
'plasma clozapine measurement' <http://ebi.ac.uk/efo/EFO_0600038>
'plasma clozapine-to-N-desmethylclozapine ratio measurement' <http://ebi.ac.uk/efo/EFO_0600040>
'plasma leucine rich alpha-2-glycoprotein 1 measurement' <http://ebi.ac.uk/efo/EFO_0600050>
'primary dental caries' <http://ebi.ac.uk/efo/EFO_0600095>
'resistance training' <http://ebi.ac.uk/efo/EFO_0600037>
'response to cosmetics' <http://ebi.ac.uk/efo/EFO_0600093>
'response to mitochondrial complex I inhibitor' <http://ebi.ac.uk/efo/EFO_0600033>
'response to neuromuscular blocker' <http://ebi.ac.uk/efo/EFO_0600034>
'response to peritoneal dialysis' <http://ebi.ac.uk/efo/EFO_0600090>
'response to recombinant tissue-plasminogen activator' <http://ebi.ac.uk/efo/EFO_0600080>
'response to smoking cessation agent' <http://ebi.ac.uk/efo/EFO_0600051>
'response to stimulant therapy' <http://ebi.ac.uk/efo/EFO_0600075>
'response to tolvaptan' <http://ebi.ac.uk/efo/EFO_0600065>
'response to varenicline' <http://ebi.ac.uk/efo/EFO_0600052>
'serum N-desmethylclozapine measurement' <http://ebi.ac.uk/efo/EFO_0600043>
'serum clozapine measurement' <http://ebi.ac.uk/efo/EFO_0600041>
'serum clozapine-to-N-desmethylclozapine ratio measurement' <http://ebi.ac.uk/efo/EFO_0600042>
'serum lipopolysaccharide activity' <http://ebi.ac.uk/efo/EFO_0600064>
'skin roughness measurement' <http://ebi.ac.uk/efo/EFO_0600094>
'spleen volume' <http://ebi.ac.uk/efo/EFO_0600047>
'stimulant use measurement' <http://ebi.ac.uk/efo/EFO_0600076>
'time spent outdoors measurement' <http://ebi.ac.uk/efo/EFO_0600081>
'tumor necrosis factor alpha gene expression measurement' <http://ebi.ac.uk/efo/EFO_0600069>
appendectomy <http://ebi.ac.uk/efo/EFO_0600086>
paolaroncaglia commented 2 years ago

@zoependlington sounds like a Protege preferences setup issue...

zoependlington commented 2 years ago

This is now fixed and will be available as soon as the patch release is available.

eks-ebi commented 2 years ago

Thanks @zoependlington !