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EBISPOT / efo

Github repo for the Experimental Factor Ontology (EFO)
https://www.ebi.ac.uk/efo/
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Fix parents for Hi-C - EFO:0007693 #1480

Closed sbreiff closed 2 years ago

sbreiff commented 2 years ago

We requested some new terms and term edits a couple years ago for the 4D Nucleome Network (https://github.com/EBISPOT/efo/issues/504) but it looks as though Hi-C was assigned the parent term "Ligation-free chromosome conformation capture assay" (EFO:0009968) rather than "Ligation-mediated chromosome conformation capture assay" (EFO:0009967), as Hi-C assays do involve a ligation step. Could this be corrected?

paolaroncaglia commented 2 years ago

Hi @sbreiff , I'll look into this in time for the next EFO release (scheduled for April 19th). I'll comment back here when done.

paolaroncaglia commented 2 years ago

@sbreiff

We requested some new terms and term edits a couple years ago for the 4D Nucleome Network (#504) but it looks as though Hi-C was assigned the parent term "Ligation-free chromosome conformation capture assay" (EFO:0009968) rather than "Ligation-mediated chromosome conformation capture assay" (EFO:0009967), as Hi-C assays do involve a ligation step. Could this be corrected?

This is done now and will be public with the next EFO release, scheduled for April 19th. Thank you.

Paola