Mapping EFO measurement to EFO - entity based strategy

[dosumis]

Strategy: Use UberGraph to map based on shared entity reference

Rough first draft:

PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX IAO: <http://purl.obolibrary.org/obo/IAO_>
PREFIX EFO: <http://purl.obolibrary.org/obo/EFO_>
PREFIX OBA: <http://purl.obolibrary.org/obo/OBA_>
PREFIX RO: <http://purl.obolibrary.org/obo/RO_>

SELECT * WHERE {
  ?measurement owl:subClassOf EFO:0001444 . # measurement
  ?measurement IAO:0000136 ?obj . # is_about
  ?trait owl:subClassOf OBA:0000001 .
  ?trait RO:0000052 ?obj . # characteristic_of
} LIMIT 10

TODO:

• [x] Fix OBA base resolution (https://github.com/OBOFoundry/purl.obolibrary.org/pull/841/files)
• [ ] Make PR on UberGraph to add OBA base to : https://github.com/INCATools/ubergraph/blob/master/ontologies.txt
• [ ] Test queries: Using the redundant graph might => too many mappings. Try the nonredundant graph to start.
• [ ] Manually review --> SSSOM file (@matentzn - where should this live? - please answer on https://github.com/EBISPOT/efo/issues/1554)

[matentzn]

src/ontology/mappings/oba_efo.sssom.tsv would be a good name for it. We can create a goal for downloading it from google sheets and as well to have the source of truth in google while we are working on it.