EBISPOT / efo

Github repo for the Experimental Factor Ontology (EFO)
https://www.ebi.ac.uk/efo/
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NTRs for Parse Evercode WT v1-v3 and Parse Biosciences technologies #2202

Closed brian-mott closed 2 months ago

brian-mott commented 2 months ago

Parse Biosciences has several versions of its Evercode Whole Transcriptome single cell sequencing kits. It would make sense to have terms for each version and also a parent term grouping for Parse Biosciences, similar to how 10x has a parent grouping term for its assays.

Preferred term label

Parse Evercode Whole Transcriptome v1 Parse Evercode Whole Transcriptome v2 Parse Evercode Whole Transcriptome v3

Synonyms

Parse Evercode WT v1 Parse Evercode WT v2 Parse Evercode WT v3

Textual definition

Parse Evercode WT v1: Parse Biosciences single cell sequencing that utilizes combinatorial split-pool barcoding based off of SPLiT-seq. Parse Evercode WT v2: Parse Biosciences single cell sequencing that utilizes combinatorial split-pool barcoding based off of SPLiT-seq. Parse Evercode WT v3: Parse Biosciences single cell sequencing that utilizes combinatorial split-pool barcoding based off of SPLiT-seq.

Suggested parent term

Ideally there is a parent term Parse Biosciences technology (or something similar) for the the above-proposed version terms and then this grouping has these parent terms: Parse Biosciences technology: single cell library construction (EFO:0010183) Parse Biosciences technology: SPLit-seq (EFO:0009919)

Additional Information

https://www.biorxiv.org/content/10.1101/2022.08.27.505512v1.full https://www.parsebiosciences.com

zoependlington commented 2 months ago

Added terms (EFO_0022600, EFO_0022601, EFO_0022602, and EFO_0022603) which will be available after the EFO May (15th) release.