EBISPOT / efo

Github repo for the Experimental Factor Ontology (EFO)
https://www.ebi.ac.uk/efo/
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vascular wound healing / neointima / abnormal vascular wound healing #305

Closed gkos-bio closed 5 years ago

gkos-bio commented 6 years ago

wound healing is defined in EFO in biological process. vascular wound healing is missing and abnormal vascular wound healing / neointima is missing too.

paolaroncaglia commented 5 years ago

Notes for self/EFO editor:

EFO:0009457 abnormal vascular wound healing

paolaroncaglia commented 5 years ago

@gkos-bio To avoid confusion, could you please clarify the exact label of the neointima-related term you'd like in EFO? Thanks.

[Note for self: emailed Gautier on 19/12 and again on 8/1.]

gkos-bio commented 5 years ago

Neointima formation

'Neointima formation' is a term used frequently in the medical literature and many studies have been published to target genes and pathways to reduce it.

'Neointima formation' is a characteristic response of arteries to several form of injuries and resembles the wound healing process as it involves the sequential processes of inflammation, granulation, and remodeling.

It's surprising to see that this term has not been defined while 'neointima formation' is an intense field of research and is currently targeted.

Related terms

'neointimal proliferation' and 'adverse neointimal proliferation' are related terms.

'neointimal hyperplasia' (synonym 'artery neointimal hyperplastic lesion') 'neointimal hyperplasia after vascular injury'

'neointimal hyperplasia' (and synonyms) should be defined as a subclass of 'hyperplasia' in EFO3.

'Neointimal healing' would be a subclass of 'vascular wound healing'. Healing would happen after a stent implantation (for instance) with 'neointimal hyperplasia'.

I found the term 'healed neointimal rupture/erosion' and 'healed neointimal rupture or erosion' in the litterature too.

paolaroncaglia commented 5 years ago

@gkos-bio Thanks for your feedback. I’m not sure about how to define the fine line/discriminate between neointima formation and hyperplasia. Both are non-physiological processes; is there a quantitative or qualitative feature around which the formation becomes hyperplasia? Both require a non-physiological proliferation. So, to keep it simple, I think we could:

Thanks, Paola

[Note for self/editor: I emailed Gautier about the above on 23/1 and then on 7/2.]

gkos-bio commented 5 years ago

@paolaroncaglia

I can't really answer the question about quantitative/qualitative discrimination of hyperplasia and neointima.

Please, go for the addition of 'neointimal hyperplasia' with its synonyms. Let's add ‘neointimal healing’ as a synonym for the time being.

Thank you Gautier

paolaroncaglia commented 5 years ago

I will

EFO:0009652 neointimal hyperplasia

paolaroncaglia commented 5 years ago

Hi @gkos-bio , The new term is EFO:0009652 neointimal hyperplasia. Thanks!