New EFO terms for MONDO, OMIT and SYMP mapped terms

[zoependlington]

• MONDO_0000226 mineral metabolism disease
• MONDO_0000462 eye adnexa disease
• MONDO_0000471 tricuspid valve disease
• MONDO_0001221 esophageal varices
• MONDO_0001292 autonomic nervous system disease
• MONDO_0001371 protein energy malnutrition
• MONDO_0001397 mononeuropathy
• MONDO_0001397 mononeuropathy
• MONDO_0001564 binocular vision disease
• MONDO_0001786 uterine inflammatory disease
• MONDO_0001824 polyneuropathy
• MONDO_0002156 fallopian tube disease
• MONDO_0002263 female reproductive system disease
• MONDO_0002476 anuria
• MONDO_0002869 heart valve disease
• MONDO_0003150 male reproductive system disease
• MONDO_0003330 urinary tract obstruction
• MONDO_0003382 eyelid disease
• MONDO_0003394 dental pulp disease
• MONDO_0003543 trigeminal nerve disease
• MONDO_0003628 pulmonary valve disease
• MONDO_0003648 tympanic membrane disease
• MONDO_0003749 esophageal disease
• MONDO_0003767 mitral valve disease
• MONDO_0003803 aortic valve disease
• MONDO_0003803 aortic valve disease
• MONDO_0003996 basal ganglia disease
• MONDO_0004785 blepharitis
• MONDO_0004795 otitis externa
• MONDO_0004868 biliary tract disease
• MONDO_0004872 hemorrhoid
• MONDO_0006816 arthropathy
• MONDO_0007691 chronic inflammatory demyelinating polyneuropathy
• MONDO_0016582 congenital mitral malformation
• MONDO_0018628 HIV-associated cancer
• MONDO_0020584 anemia due to enzyme disorder
• MONDO_0020591 disease of peritoneum
• MONDO_0020598 malabsorption syndrome
• MONDO_0021146 headache disorder
• MONDO_0021568 renal tubule disease
• MONDO_0024270 parasitic intestinal disease
• MONDO_0024432 nerve plexus disease
• MONDO_0024571 AIDS-related disorder
• MONDO_0024571 AIDS-related disorder
• MONDO_0043459 radiation-induced disorder
• MONDO_0044343 cervical disc degenerative disease
• MONDO_0056798 disorder of appendix
• OMIT_0014025 Spirochaetales Infections
• SYMP_0000551 disturbances of sensation of smell and taste

[zoependlington]

Webulous: https://docs.google.com/spreadsheets/d/17nj9OyapYMEjlZBrLPQN_rLmKFsPvPF1GLY4On3vLXg/edit?usp=sharing

All MONDO terms also need to be added to EFO3 mapping file.

[zoependlington]

• Terms to move under mineral metabolic disease:

  • [x] calcium metabolic disease
    • [x] Move autosomal dominant hypocalcemia under calcium metabolic disease
    • [x] Move Tumoral calcinosis under
    • [x] Move Bilateral striopallidodentate calcinosis under
  • [x] Neurodegeneration with brain iron accumulation
  • [x] fatal multiple mitochondrial dysfunction syndrome

• Terms to move under eye adnexa disease:

  • [x] conjunctival disorder
  • [x] blepharophimosis
  • [x] eyelid malformation
  • [x] eyelids malposition disorder
  • [x] rare palpebral disease
  • [x] lacrimal apparatus disease

• Terms to move under tricuspid valve disease:

  • [x] Ebstein anomaly
  • [x] tricuspid valve stenosis
  • [x] tricuspid valve prolapse

• Terms to move under autonomic nervous system disease

  • [x] autonomic dysreflexia
  • [x] ganglioneuroma
  • [x] paraganglioma
  • [x] diabetic neuropathy
  • [x] frey syndrome
  • [x] ondine syndrome
  • [x] harlequin syndrome

• Terms to move under protein energy malnutrition:

  • [x] kwashiorkor
  • [x] marasmus

• Terms to move under mononeuropathy:

  • [x] femoral neuropathy
  • [x] radial nerve lesion
  • [x] sciatic neuropathy
  • [x] tibial neuropathy
  • [x] ulnar neuropathy

• Terms to move under polyneuropathy:

  • [x] alcoholic neuropathy
  • [x] paraneoplastic polyneuropathy
  • [x] polyradiculoneuropathy

• Terms to move under female reproductive system disease:

  • [x] female infertility
  • [x] female reproductive endometrioid cancer
  • [x] gynatresia
  • [x] endometrial neoplasm
  • [x] ovarian neoplasm
  • [x] genetic gynecological tumor
  • [x] uterine neoplasm
  • [x] vaginal neoplasm
  • [x] vulvar carcinoma
  • [x] ovarian disease
  • [x] pelvic inflammatory disease
  • [x] uterine prolapse
  • [x] rare genetic gynecological and obsterical diseases
  • [x] uterine fiboroid
  • [x] cervical incompetence
  • [x] cervix erosion
  • [x] hemometra
  • [x] parametritis
  • [x] uterine inversion
  • [x] vulvovaginitis
  • [x] vulvitis
  • [x] vulvar lichen sclerosus
  • [x] vulvovaginal candidiasis

• Terms to move under heart valve disease:

  • [x] pulmonary valve stenosis
  • [x] tricuspid valve prolapse
  • [x] tricuspid valve stenosis

• Terms to move under male reproductive system disease:

  • [x] cryptorchidism
  • [x] orchitis
  • [x] testicular hydrocele
  • [x] male genital tuberculosis
  • [x] male reproductive organ cancer
  • [x] male infertility
  • [x] penile carcinoma
  • [x] penile fibromatosis
  • [x] penile neoplasm
  • [x] benign prostatic hyperplasia
  • [x] prostate adenocarcinoma
  • [x] prostatitis

• Terms to move under urinary tract obstruction:

  • [x] hydronephrosis
    • [x] congenital hydronephrosis

• Terms to move under eyelid disease:

  • [x] blepharophimosis
  • [x] eyelid malformation
  • [x] eyelids malposition disorder
  • [x] rare palpebral disease
  • [x] lacrimal apparatus disease

• Terms to move under dental pulp disease:

  • [x] dental pulp exposure
  • [x] pulpitis

• Terms to move under trigeminal nerve disease:

  • [x] ophthalmic herpes zoster
  • [x] trigeminal neuralgia

• Terms to move under pulmonary valve disease:

  • [x] pulmonary valve stenosis

• Terms to move under esophageal disease:

  • [x] Barrett's esophagus
  • [x] diffuse esophageal spasm
  • [x] esophageal diverticulosis
  • [x] esophageal malformation
  • [x] esophagitis
  • [x] gastoesophageal reflux disease
  • [x] esophageal adenocarcinoma
  • [x] esophageal carcinoma

• Terms to move under mitral valve disease:

  • [x] mitral valve prolapse
  • [x] mitral valve stenosis

• Terms to move under aortic valve disease:

  • [x] aortic stenosis
  • [x] aortic valve calcification
  • [x] aortic valve insufficiency
  • [x] aortic valve prolapse

• Terms to move under basal ganglia disease:

  • [x] basal ganglia cerebrovascular disease
  • [x] bilateral striopallidodentate calcinosis
  • [x] biotin-responsive basal ganglia disease
  • [x] parkinson's disease

• Terms to move under blepharitis:

  • [x] hordeolum
  • [x] filarial elephantiasis
  • [x] meibomian cyst

• Terms to move under biliary tract disease:

  • [x] bile duct adenoma
  • [x] bile duct carcinoma
  • [x] common bile duct neoplasm
  • [x] non-neoplastic bile duct disorder
  • [x] biliary atresia
  • [x] extrahepatic cholestasis
  • [x] intrahepatic cholestasis of pregnancy
  • [x] familial intrahepatic cholestasis
  • [x] neonatal intrahepatic cholestasis
  • [x] obstructive jaundice
  • [x] biliary dyskinesia
  • [x] choledocholithiasis
  • [x] ampulla of vater carcinoma
  • [x] bile reflux
  • [x] biliary tract neoplasm
  • [x] genetic biliary trat disease
  • [x] postcholecystectomy syndrome

• Terms to move under anemia due to enzyme disorder:

  • [x] hemolytic anemia due to an erythrocyte nucleotide metabolism disorder
  • [x] hemolytic anemia due to hexose monophosphate shunt and glutathione metabolism anomalies

• Terms to move under disease of peritoneum:

  • [x] peritoneal neoplasm
    • [x] peritoneal mesothelioma
  • [x] peritonitis

• Terms to move under malabsorption syndrome:

  • [x] autoimmune enteropathy and endocrinopathy-susceptibility to chronic infections syndrome
  • [x] immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome
  • [x] syndromic multisystem autoimmune disease due to Itch deficiency
  • [x] blind loop syndrome
  • [x] celiac disease
  • [x] intestinal disaccharide deficiency and disaccharide malabsorption
  • [x] congenital sucrase-isomaltase deficiency
  • [x] genetic intestinal disease due to fat malabsorption
  • [x] abetalipoproteinemia
  • [x] acrodermatitis enteropathica
  • [x] chylomicron retention disease
  • [x] intestinal disease due to vitamin absorption anomaly
  • [x] lactose intolerance

• Terms to move under headache disorder:

  • [ ] familial or sporadic hemiplegic migraine
  • [ ] migraine disorder
  • [ ] burning mouth syndrome
  • [ ] rare genetic headache

• Terms to move under renal tubule disease:

  • [ ] primary fanconi syndrome
  • [ ] distal renal tubular acidosis
  • [ ] primary renal tubular acidosis

• Terms to move under parasitic intestinal disease:

  • [ ] Blastocystis hominis infectious disease
  • [ ] balantidiasis
  • [ ] giardiasis
  • [ ] anisakiasis
  • [ ] taeniasis

• Terms to move under nerve plexus disease:

  • [ ] brachial plexus neuropathy

• Terms to move under AIDS-related disease:

  • [x] HIV enteropathy
  • [x] HIV wasting syndrome
  • [x] HIV-associated nephropathy

• Terms to move under radiation-induced disorder:

  • [x] osteoradionecrosis

• disorder of appendix

  • [x] appendiceal neoplasm
  • [x] appendicitis

• spirochaetales infection

  • [x] Borrelia infectious disease
  • [x] Treponema infectious disease
  • [x] leptospirosis

[zoependlington]

• [x] EFO term "joint disease" (EFO_1000999) needs x-ref ICD10:M18