EBISPOT / efo

Github repo for the Experimental Factor Ontology (EFO)
https://www.ebi.ac.uk/efo/
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Add a new term, 'insulin secretion measurement’ #690

Closed mariacos closed 4 years ago

mariacos commented 4 years ago

Add a new term, 'insulin secretion measurement’ definition: Measurement of compounds, generally C-peptide or mature insulin, whose levels quantify insulin secretion from the pancreas.

Note: I'm requesting this term because the similar existing term, EFO_0008001 'insulin secretion rate measurement', isn't an appropriate parent for measures of insulin secretion that don't generate a rate. Alternatively, perhaps EFO_0008001 could be edited to remove 'rate' from the name and definition.

paolaroncaglia commented 4 years ago

@twhetzel Please see request above. I'd be inclined to edit EFO_0008001 'insulin secretion rate measurement' to make it broader, but only if it hasn't been used in GWAS to refer specifically to the rate of secretion, rather than more generically to quantify secretion. If it's too complicated/time-consuming to verify, I'll create a new term instead (and make it a parent of EFO_0008001). Thanks!

twhetzel commented 4 years ago

I'll check out what data is annotated to this term and ping the curators about the proposed change to remove "rate" from the term name.

Data sent to the curators and will report back updates when available.

@paolaroncaglia - they reported back the name change is fine and also mentioned the definition may need changing to remove the word “rate” as well.

paolaroncaglia commented 4 years ago

Note for self: Edit EFO_0008001 'insulin secretion rate measurement':

@mariacos Please send me your ORCID and

Thanks!

mariacos commented 4 years ago

Thanks Paola! My ORCID is 0000-0001-9043-693X.

Best, Maria

On Apr 9, 2020, at 11:03 AM, paolaroncaglia notifications@github.com wrote:

Note for self: Edit EFO_0008001 'insulin secretion rate measurement':

Change label to 'insulin secretion measurement’ Move 'insulin secretion rate measurement' to be a synonym Replace def with "Measurement of compounds, generally C-peptide or mature insulin, whose levels quantify insulin secretion from the pancreas." @mariacos https://github.com/mariacos Please send me your ORCID and

I'll add it as a dbxref. Thanks!

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paolaroncaglia commented 4 years ago

@mariacos EFO_0008001 'insulin secretion rate measurement' has now been edited as requested. Changes will be visible after the next EFO release, scheduled for April 15th. Thanks.