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EBISPOT / efo

Github repo for the Experimental Factor Ontology (EFO)
https://www.ebi.ac.uk/efo/
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Review links between cultured cells and ancestry categories #810

Open paolaroncaglia opened 4 years ago

paolaroncaglia commented 4 years ago

I spotted a dozen cell lines that are axiomatised as being part_of ancestry categories. I'll attach a screenshot. An example is:

EFO:0005384 HuH-7 "HuH-7 is a well differentiated hepatocyte derived cellular carcinoma cell line that was originally taken from a liver tumor in a 57-year-old Japanese male in 1982. (...)" Subclass of: Homo sapiens cell line hepatoma cell line part of some Japanese bearer_of some hepatocellular carcinoma derives_from some ( epithelial cell and part of some ( liver and part of some Homo sapiens)) has_quality some male

The cell line was derived from a Japanese individual, it wasn't part of him as an anatomical entity would be.

I think the screenshot captures all similar instances. I can't see that they come from Webulous templates. If they did, I'd recommend checking them or, rather, any derived ROBOT template we may have. Thanks!

Screen Shot 2020-06-24 at 16 27 22

paolaroncaglia commented 2 years ago

@zoependlington this issue hasn't been addressed yet and still looks not fully correct to me. But it's not high priority - it was spotted by me rather than requested by collaborators.