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EBISPOT / goci

GWAS Catalog Ontology and Curation Infrastructure
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All publications in depo-curation must be assigned a curator and curation status #1250

Closed ljwh2 closed 2 months ago

ljwh2 commented 4 months ago

Since publications can now be assigned a status in Depo-curation, all existing publications should be assigned a status and curator that matches the status and curator in the curation app.

This should be done in the same way as for publications without a submission:

Curator & status (note, not all the studies of a publication may be the same. If we are setting statuses at publication level the following rules could be applied: Ignore any study with Requires review. Publish study overrules other statuses (but ensuring that any unpublished studies are not accidentally published due to their status). Other publications with mixed statuses may need manual review (I expect these will be few).

ljwh2 commented 3 months ago

@ljwh2 to check

ljwh2 commented 2 months ago

@earlEBI to verify this

earlEBI commented 2 months ago

@sajo-ebi Could I please get an export of the publications in Depocuration Sandbox for me to check? And the date the sync was done.

sajo-ebi commented 2 months ago

@earlEBI here is the export of Publications in Sandbox https://docs.google.com/spreadsheets/d/1sKZRym7CGbark4ELAlA5hB3ctc9e0jbn06qy5fHFaZc/edit#gid=0

earlEBI commented 2 months ago

@sajo-ebi I've requested access.

earlEBI commented 2 months ago

All publications that were added to the Curation queue before the 28th March are in Depocuration Sandbox. I cannot check that the statuses match, however, unless there is a sandbox-depocuration export with curation status, @sajo-ebi ? The number in Curation db with status 'level 1 curation done' is similar to the number with status 'submission complete' in depocuration sandbox, and the few I spot-checked were correct.

ljwh2 commented 2 months ago

@sajo-ebi will provide the list of publications with curation status "submission complete"

sajo-ebi commented 2 months ago

@earlEBI please find attached sheet Pmid with submission Complete status https://docs.google.com/spreadsheets/d/1rul6CVlSOk72DSTe6MZBdNcCPTxDG__oW8QhJ_y3IAA/edit#gid=0

earlEBI commented 2 months ago

All publications with 'level 1 curation done' status in curation db before 28th March are in the spreadsheet provided (except for one which was manually changed so is ok.)