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EBISPOT / goci

GWAS Catalog Ontology and Curation Infrastructure
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Replace all EFO trait annotations of MONDO_0009354 with OBA_2040073 #1262

Closed eks-ebi closed 6 months ago

eks-ebi commented 6 months ago

A number of studies and associations have been incorrectly annotated with MONDO_0009354 (methylcobalamin deficiency type cblE). This seems to have happened when the original ontology term used to annotate these studies and associations was made obsolete, and it was accidentally changed to an incorrect replacement term. The correct new EFO term is http://purl.obolibrary.org/obo/OBA_2040073 (trait in response to paclitaxel)

Action: MONDO_0009354 term needs to be replace with OBA_2040073 (trait in response to paclitaxel), wherever it appears in the Catalog.

jiyue1214 commented 6 months ago
Studies with the MONDO_0009354 term (based on gwas-catalog-v1.0.3.1-studies-r2024-03-01.tsv): No of studies PMID publication date
1 22843789 2012-07-27
1 23006423 2012-09-24
1 23204130 2012-11-30
2 23648065 2013-05-04
1 23776197 2013-06-17
1 24025145 2013-09-11
2 26015512 2015-05-26
1 26138065 2015-07-02
1 26840454 2016-01-31
3 27047539 2016-03-22
3 28763429 2017-07-31
2 28935272 2017-09-18
1 29367611 2018-01-24
4 34162658 2021-06-23
1 34437536 2021-08-26
eks-ebi commented 6 months ago

I will check the new EFO after the next DR. I'll move this ticket to the new user support epic, even though it's done, just so that I don't forget to have a look.