Move sumstats files and yamls to the public ftp

[karatugo]

✅ One particular submission with more than 6,000 studies only has md5sums in GCST directories on staging and released to public. No sumstats files or yamls have been created. Submitted on 31.03.24. https://www.ebi.ac.uk/gwas/deposition/submission/6608c665db8d9f000198b901 -- ✅ Copy files to staging -- ✅ Check if the files moved to the staging ftp -- ✅ Check if the files moved to the public ftp -- ✅ Generate metadata yaml files

[karatugo]

Started copying files from the private ftp to staging.

ID:     3670454
Name:   copy_goci1304

[karatugo]

Copying files from the private ftp to staging complete.

[karatugo]

Study files are synced successfully to the public ftp.

[karatugo]

Generate metadata yaml files started here. https://github.com/EBISPOT/goci/issues/1292#issuecomment-2093095857

[karatugo]

Randomly checked a couple of them and the yaml files are in the public ftp.

[sprintell]

@eks-ebi pls help confirm ...

[eks-ebi]

I checked a few and the sumstats and yaml files are there in the public FTP. There is just one weird thing: the filetype field appears to be blank. See examples yaml file here: http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90384001-GCST90385000/GCST90384080/

[karatugo]

I think this is because they are validated manually. I need to update them in the database.

@eks-ebi Do you know what their correct file types are?

[eks-ebi]

@karatugo please ignore the last message, I was looking at the wrong submission

[eks-ebi]

file type for all should be GWAS-SSF v1.0

[karatugo]

Added the missing file type to https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/gh/ebispot/goci/1281 and will work on them soon

[karatugo]

If there's nothing else, is it okay close this ticket? @eks-ebi

[eks-ebi]

sorry @karatugo yes I think it's okay to close this ticket