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EBISPOT / goci

GWAS Catalog Ontology and Curation Infrastructure
Apache License 2.0
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Investigate & plan options for GWAS Diagram #1322

Open ljwh2 opened 1 month ago

ljwh2 commented 1 month ago

Some notes are here: https://docs.google.com/document/d/1tUkwMz0ZfPFC_Dw4PVh12HV3sn43xHyhlzbQJej0lro/edit?usp=sharing

Analyse possibility to display pre-generated filtered diagrams

ala-ebi commented 1 month ago

Diagram file wasnt being generated in garfield because there is a logic that says if there is a file with a certain name used for caching, then we dont need to generate a new diagram… We needed to rename that file (to back it up) before triggering the diagram regeneration so that the cache file is not found.

ala-ebi commented 1 month ago

Virtuoso giving HTTP 500 internal server error. A restart appears to have fixed it

ala-ebi commented 1 month ago

Pussycat giving error

[http-nio-10180-exec-111] o.s.boot.web.support.ErrorPageFilter     : Forwarding to error page from request [/gwasdiagram/associations] due to exception [GC overhead limit exceeded]
java.lang.OutOfMemoryError: GC overhead limit exceeded

will increase the memory for Tomcat and try again

ala-ebi commented 3 weeks ago

memory increase solved issue, currently facing issues with RDF platform (decommissioned in 2020)