Investigate the error: Cannot find 'curl' nor 'wget' utility

EBISPOT / goci

GWAS Catalog Ontology and Curation Infrastructure

Apache License 2.0

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Investigate the error: Cannot find 'curl' nor 'wget' utility #1344

Closed karatugo closed 2 months ago

karatugo commented 3 months ago

[x] Investigate the following error.

After validation request sent, I see the following logs in Celery worker logs.

[2024-06-05 14:17:45,669: WARNING/ForkPoolWorker-29] Running NextFlow command...
[2024-06-05 14:17:45,853: WARNING/ForkPoolWorker-29] Error in submitting job:
[2024-06-05 14:17:45,853: WARNING/ForkPoolWorker-29] ERROR: Cannot find 'curl' nor 'wget' utility --  please install one of them

This causes validation fail.

karatugo commented 3 months ago

Tested in prod and dev but couldn't reproduce the error. Let's wait a few days to see if it appears again.

karatugo commented 3 months ago

Checked the last 6 days logs, no curl or wget error appear in them.

ljwh2 commented 3 months ago

Could be due to disk space issue, error message could be misleading.

karatugo commented 3 months ago

Encountered the issue again today. Will do some debugging.

karatugo commented 3 months ago

Added curl and wget to the lmod_cmd in sandbox and prod Celery start scripts.