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EBISPOT / goci

GWAS Catalog Ontology and Curation Infrastructure
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Adapt existing study page to show all studies, and specific study types #1375

Open ljwh2 opened 1 month ago

ljwh2 commented 1 month ago

User story:

As a user, I want easy access to browse all studies in the Catalog, and to be able to see GxE studies only. I want this to be presented on a separate page, https://www.ebi.ac.uk/gwas/studies/. The link to the studies page should be presented on the search results page https://www.ebi.ac.uk/gwas/search with text “Browse all studies”. On the studies page, I want to be presented with a table of all studies in the same format/style as on the Trait pages. I want to see a second table containing only studies with the GxE flag. This could be presented similarly to associations, studies, sumstats tables on the other pages. A third table could be added called “seqGWAS”, including only studies with “Whole genome sequencing” or “Exome-wide sequencing” in the genotyping_technology field. Note that some studies contain multiple genotyping technology types. For preference, the table should exclude any studies with any other genotyping technology, so a study with “Whole genome sequencing | Genome-wide genotyping array” would be excluded, but “Whole genome sequencing | Exome-wide sequencing” would be included. However, if this is difficult to implement, we can discuss.

ljwh2 commented 1 month ago

@ljwh2 to provide updated header text for the studies page

eks-ebi commented 3 weeks ago

@ala-ebi this page looks really good and functions well, and the datasets that are retrieved make sense (e.g. for seqGWAS). There is just a typo in the original link - it says "Browser all studies", should be "Browse all studies"

ala-ebi commented 3 weeks ago

thanks for testing @eks-ebi, will fix the typo

ljwh2 commented 3 days ago

Functionality all works well. The "Browse all studies" link could be made more eyecatching if this can be done easily @sprintell

On the studies page itself, add some text in the header like: “Select study type:” so the user is prompted to click the box. 15:01 The text in the hover could then be changed to: GxE: All studies including genotype-by-environment interaction in the association model seqGWAS: all studies based exclusively on whole-genome or whole-exome genotyping