Duplicate EFOs in Curation App

[earlEBI]

EFO duplicates keep appearing on this page in the curation app: http://ves-ebi-e4-x.ebi.ac.uk:8080/gwas/curation/efotraits

I have already cleaned this up last week but they have reappeared. Again I have cleaned up as listed here https://app.zenhub.com/files/2995118/bc27da0f-3555-4c27-92a2-a78db601462d/download

However, where 'deleted' is listed, these changes don't seem to have been saved as when you search for the term, eg diacylglycerol 36:1 measurement, you can still see the duplicates in curation app.

For the terms where two different URIs existed, I deleted the newer term from the depocuration as well.

Otherwise, duplicates, eg. the obsolete MONDO term for Myopia, do not show in Depocuration app, but I think will still cause problems when importing studies with the EFO label myopia.

[earlEBI]

Please delete the following EFO from depocuration as I am uanble to because they say they're linked to studies. I changed the EFOs in Curation app:

Creatine measurement EFO_0021579 Inositol measurement EFO_0021606 Theobromine measurement EFO_0021673

[ljwh2]

@earlEBI is this an outstanding issue?

[earlEBI]

Yes, although I now see the EFOs are currently linked to PMID 33634981. So I'll try and change them first.

[earlEBI]

Actually, the problem terms are not in the Catalog UI, so this does still need to be cleaned up by a developer.

So, for instance: If you search for "not in use" (which is what I added to the 3 redundant term labels") on the studies page of depocuration, you see three linked studies from PMID 33634981. GCST90129098 GCST90129130 GCST90129205

But when you search for these GCSTs in the live UI, they are linked to different (correct) EFOs.