Splitting sumstats for Shin 24816252

[earlEBI]

Related to https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/ebispot/goci/496

I will submit 533 studies - 486 metabolites with sumstats and the rest ratio traits without sumstats.

Currently there are 453 sumstats files attached to GCST002443

There are another 33 relevant files here: https://metabolomics.helmholtz-muenchen.de/gwas/index.php?task=download under shin_et_al.xeno.metal.out.tar.gz

Do you need me to do anything to get these extra files @jdhayhurst ?

The submission template is here:

https://app.zenhub.com/files/2995118/bf501ad4-21a8-4190-bc44-eda6157dc779/download

[ljwh2]

@earlEBI @jdhayhurst Can I just clarify what this ticket is waiting for? Are the split sumstats available yet? Are we still waiting for EFOs?

[earlEBI]

@ljwh2 not waiting for EFO

[earlEBI]

Need to keep GCST002443

[earlEBI]

@sajo-ebi Hi Sajo please could you change the following GCSTs:

From GCST90243402 to GCST002443 From GCST90243934 to GCST002442

submission id '6391f4fcff81b70001d148cc'

[earlEBI]

GCSTs changed as above and publication imported to Catalog. Published to Catalog.

[earlEBI]

For the record, because only some of the sumstats files had already been harmonised (by request), I formatted all the raw files (486) and submitted for validation along with the raw untouched files. All files will be [re-]harmonised through the automatic pipeline.

[earlEBI]

check after overnight sync if need to move sumstats manually: From GCST90243402 to GCST002443 From GCST90243934 to GCST002442

[earlEBI]

Currently a problem with permissions so folders have not been created. Studies should be released in next DR but links may be broken.