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GWAS Catalog Ontology and Curation Infrastructure
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Replace obsolete EFO IDs with new MONDO equivalents #893

Closed eks-ebi closed 1 year ago

eks-ebi commented 1 year ago

A user has pointed out some EFO terms are showing the prefix "obsolete" in the Search UI. This is because they have been made obsolete in EFO in favour of equivalent terms from MONDO (see EFO ticket https://github.com/EBISPOT/efo/issues/1750).

Task:

Replace the following EFO IDs with their MONDO equivalents. The trait name can remain unchanged.

cancer: http://www.ebi.ac.uk/efo/EFO_0000311 --> http://purl.obolibrary.org/obo/MONDO_0004992

coronary stenosis: http://www.ebi.ac.uk/efo/EFO_1000882 --> http://purl.obolibrary.org/obo/MONDO_0006715,

glaucoma: http://www.ebi.ac.uk/efo/EFO_0000516 --> http://purl.obolibrary.org/obo/MONDO_0005041

bipolar disorder: http://www.ebi.ac.uk/efo/EFO_0000289 --> http://purl.obolibrary.org/obo/MONDO_0004985

systemic lupus erythematosus: http://www.ebi.ac.uk/efo/EFO_0002690 --> http://purl.obolibrary.org/obo/MONDO_0007915

cognitive disorder: http://www.ebi.ac.uk/efo/EFO_1001457 --> http://purl.obolibrary.org/obo/MONDO_0002039

ljwh2 commented 1 year ago

mentioned in this ticket

ljwh2 commented 1 year ago

To work on w/c 3rd Jan

ljwh2 commented 1 year ago

Close after DR