EBISPOT / gwas-sumstats-harmoniser

GWAS Summary Statistics Data Harmonisation
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Need to QC non-rsID type variant IDs #14

Open jdhayhurst opened 3 years ago

jdhayhurst commented 3 years ago

Currently variants that are not rsIDs are not checked in the final qc steps (the steps that check if it's synonymous with the provided variant ID). This means that ids such as TMP_ESP ids that do exist in the Ensembl reference, are not checked.