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EBISPOT / gwas-sumstats-harmoniser

GWAS Summary Statistics Data Harmonisation
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Query over GCST90010715 harmonisation #51

Closed jinghuazhao closed 1 year ago

jinghuazhao commented 1 year ago

I am new to this repository and wonder if I can post a query here.

We are interested in use of GCST90010715 harmonisation results but it appears both the hm_beta and hm_effect_allele_frequency variables were filled with missing values; could it be possible to have them? The GCST90010715_buildGRCh37.tsv file has most information though it only has MAF -- would gwas-sumstats-harmoniser be able to recover effective allele frequence (EAF), for instance? Since the sumstats were based on imputed genotypes I assume it is likely to be less involved?

Thank you!

ljwh2 commented 1 year ago

Closing as response given by email