Docker and Dependency Updates for sumstats-service - Githubissues

EBISPOT / gwas-sumstats-service

Summary statistics service

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Docker and Dependency Updates for sumstats-service #270

Closed karatugo closed 1 year ago

karatugo commented 1 year ago

This PR introduces changes to the Docker configuration and Python dependencies.

Dockerfile Changes:

Add make to apt-get installation in Dockerfile
Adjust Docker COPY command
Update QUEUE_HOST environment variable
Include command to run Flask server at container start

Requirements Updates:

Add the blinker package, essential for signaling support in Flask
Removed explicit versioning for PyNaCl and pytest packages, allowing pip to decide the best version. This was done to resolve potential version conflicts.

Testing Steps:

After pulling these changes:

Rebuild the Docker images using:
```
docker-compose build
```
Launch the application with:
```
docker-compose up
```
Verify that the Flask application starts without any import errors and that it binds to the correct interface and port.

karatugo commented 1 year ago

I'll submit another PR with cleaned up code and more clear git commit messages.