EBISPOT / gwas-user-requests

Repository to collect user requests and bug reports for the GWAS Catalog
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The harmonised summary statistics list contains data not available. #80

Closed DSuveges closed 11 months ago

DSuveges commented 11 months ago

Hi Guys,

The list of harmonised summary statistics on ftp contains a study that is not available (./GCST000001-GCST001000/GCST000964/harmonised/21297633-GCST000964-EFO_0000729.h.tsv.gz). I guess it has been retracted or was put under embargo. I'm wondering if there's a mechanism to update the list reflecting these updates.

Thanks.

ljwh2 commented 11 months ago

@earlEBI please could you investigate and remove the harmonised file if appropriate?

earlEBI commented 11 months ago

This was a file which had a discrepancy. Author was contacted but did not reply so the link in UI was removed but the folder was not hidden. I've now hidden GCST000964 on staging and removed (including harmonised subfolder) from public FTP and harmonised files list.

DSuveges commented 11 months ago

Thank you guys!